Scaffold Ga0257121_1006051

Overview

Basic Information

• Taxon OID: 3300028198
• Scaffold ID: Ga0257121_1006051
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7062
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013820	Metagenome / Metatranscriptome	268	Y
F022754	Metagenome / Metatranscriptome	213	Y
F083278	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257121_100605111	F083278	N/A	VRMRSQYNKELEEIQEAIVKTFSGVHGEKVLQFLEDMYQNQVSAVPDDPYSTYFNEGGRGLVIGIKQQIKSYKDSKQQDLKTHY
Ga0257121_10060512	F013820	GGAGG	MVAIIIKFIDSRFAGKKTYILMGLGMGMMVCQMFGYHSFSEEAWGMLGIGGAATWKMGIDRDKPDPK
Ga0257121_10060513	F022754	GGA	MNELIITIMLVIPAPDKMVNWSVNEVPTQIQLIHESGLEVSYNSNPVSCSFRPRHRKEMVFRSPNNRCYSVYDLSSPRFVRHPFFWHNIQLPKPQHDMVKPDGKR