Scaffold Ga0257110_1029426

Overview

Basic Information

• Taxon OID: 3300028197
• Scaffold ID: Ga0257110_1029426
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2440
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008236	Metagenome / Metatranscriptome	336	Y
F019643	Metagenome / Metatranscriptome	228	Y
F052546	Metagenome	142	Y
F060890	Metagenome	132	Y
F065685	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_10294261	F008236	N/A	KAAGFELFAWCDSDEKIATKRPRSKKKADQWRSDLPKLVVLGDDRYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0257110_10294263	F019643	GGAG	MAKYYIKCGTLEIIFSTRKNEYNACRIAIHECNANDELDEYMYIDERGYRDAFNADQTTSVVHTEDILRKEGYIK
Ga0257110_10294264	F060890	AGGA	MIDSMKLTKYDYEMLADIADAHYEETVALQKDHYLDDDTDYFKKLEYLEELIDKTVYMIGVLSAEEE
Ga0257110_10294267	F065685	AGGAG	MKPVVGIGSNTKYGRVLKIQRDGVVVENGRGERETVSFRKIENQLKGSEK
Ga0257110_10294269	F052546	AGGA	MMKGLVLDTPMINFNINTAATGILIIASIFSGCAIMPTKNVLTMNKTIELDERAVEDINVGLRFEWIR