NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257110_1022393

Scaffold Ga0257110_1022393


Overview

Basic Information
Taxon OID3300028197 Open in IMG/M
Scaffold IDGa0257110_1022393 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2811
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013135Metagenome274Y
F073440Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0257110_10223933F073440GGAMPKIPTFESTARPTTEVGSITTGIQVSPTSTIAAKLLPASDQLANYAIKKRDNEEKLIAKKAILELKSESDKIIESQKDNISEDESINNWKQNFTPLIKQKTSSITNRRVKKLVEDGINLENSESIYHLKQNSFKAYEKESAKIYNDDINADVAKFKSETNPTLKNKYRDQLYLKAELYNEEHMLGSNDLKKRIEAIDSVLLLTDADSFIGTPDAVEKIKKIDKDINGTKFLSDEIFNNSIYNSYKQKIESVAVKGDPNADYEEAERLLNELENFERYNGSKTISGKREAQFATLKQNILTESISHDSFVRKIEQGNKFFEYQTEQKKLLEGTFFNAFDASFNKGVNKERALESGIEYESRIDLYVQSNPDATYPEQQQYARQLRLDLVDKYDEVQTAQITAFNLEENKFNVIRETNVIVEAKNNYIADPKAKNILITMSRLNGYVDEQGNPQPIKFYNDYIKILKSRQEG
Ga0257110_10223934F013135AGAAGGMADVQLSEEAIEFEKQFEESTKKVEPVNSGLITNPDEEDFNFWNKAGSLTLSAGQGVVNAVEEQGDFLDENIVSLGGLEFGDEDGKFTFKDLIPKYVSPKKWKEGGYSQKRNLPVFHKPEGIGENLTEGAARFVTGFIGPSKILKGVGL

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