Scaffold Ga0257110_1018196

Overview

Basic Information

• Taxon OID: 3300028197
• Scaffold ID: Ga0257110_1018196
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3128
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F014193	Metagenome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_10181961	F003514	AGGAG	MITPQEYNKLREQELILKAAKSGGAVKSEMIHGSLFVTFAPGFVDVFSQDLKDVLEKLLDNTIVKMYNTTNNEYAYDFI
Ga0257110_10181962	F004191	GAGG	MLKFKEIMTTLFAVLGIILIIGTVGAVETDQFILAFTLFVMGTSTMFLSIICQEK
Ga0257110_10181966	F014193	AGGAGG	MRYLKKVFDWFFQAYEPEKPEFRPKKVYNYKGRTYYLRKRKKNASSKSKRR