Scaffold Ga0257110_1012653

Overview

Basic Information

• Taxon OID: 3300028197
• Scaffold ID: Ga0257110_1012653
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3784
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F011629	Metagenome / Metatranscriptome	289	N
F045552	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_101265310	F011629	GAGG	MLNTTQVKDLVKQRFGGSIKQVYLNKCYSNKKEIADRRNMAFAVDGDVYTKVDLVALAQEIGCKRVKLHAAFLRGMQSGCWLRLQHVHYNK
Ga0257110_101265311	F045552	N/A	KDFVVEFLADVLYGLTINNVLSRQEGNGFVRMCDAQEVMQNLEKLYDAHKDDDDWVAEEVKATWTFTIDDAEDALKSYDTEYRDCICEQFEDACKDALVDAEKKLLDADYATLAERILGY
Ga0257110_10126536	F003769	GGA	MQTQTQQLKTITVKTSTKQESVHMQTLYAIIENCYNSLQIMEADCTSASYFINSANIFAQLQQLYCDNETNDYVSIKSVMEVFASNITYYDESSLYTQVVANTAMQKVLLENYVYLSN