Scaffold Ga0257110_1000677

Overview

Basic Information

• Taxon OID: 3300028197
• Scaffold ID: Ga0257110_1000677
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16063
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017831	Metagenome / Metatranscriptome	238	Y
F071269	Metagenome / Metatranscriptome	122	Y
F078785	Metagenome / Metatranscriptome	116	N
F085737	Metagenome / Metatranscriptome	111	N
F095522	Metagenome / Metatranscriptome	105	Y
F105234	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_10006771	F105234	GGAG	MTKYSDNSFEERNFENKQDQADFRMQQMLQEKGFVRGASESQLEKYSHIAGSYQKIGTDPKDGFVPRFYDVRKVLLIPDYVIYPRDSVKLFLSEVKGTNKLKEDDFNSLIELQQRAESFNDTSMYITMEVGLWWFPNPSKNKIGKYYSYPSIEKQWMSNDNWKVYEGEKDTKGNPKRYKEMNWKL
Ga0257110_100067723	F071269	AGGAG	MAKKNQYKVDFYQTVYLGSQVVEAEDRKQAISDAEDMNWKAGIGLKWSEDFDAKIDTDHDYLFICTSHSKQECEDDECNEEYWEKIEGVLK
Ga0257110_100067730	F017831	GGAG	MITECMLFLASVIPMGVDETKVIEQYLNCNDHVPQSMQKHASLYVEHFDKDNINTAVRIGWCESRGKVDAYRSDNGDTGLMQFVSWTWNWVAEKYELPEWDTWVVTRYGRPYTGKTLKTDIGFSFDRVQYVPYYNIMFASILAEDIYGKTQWRDWSSSEWCWGDEKKWKEKWLNE
Ga0257110_100067732	F078785	N/A	MNGYEYEPIHERYEFGNYVVIVHHLPLWLQFEARLYITTQTGSIELGKFIGNSILQAKTRAINSIGGYSGIIPKDETKIS
Ga0257110_10006774	F085737	GAG	MNMDIPLNKLPQSLLPIKTHDWKNACEWIRARWGRTSWDDDTILFEDSRFWSQEELDAGLQYCLQKGGDFPPTFAELSKQVKEWRGNHLENRLAEFNQELPPERGSLGDYLLTIKAESFAHACYMNVQERARRSELLVTEDKEAYKKWTMNWNEAKATYMNSSQSLGKSMSMSQSTDWDEIIAP
Ga0257110_100067743	F095522	GAGG	MDINVQLTSPPEKVFTSKGGSKYDDAIRIAIENKGEWLRIGAVPIEKRNSIYSTASAIKNGRLGNVPHGESITIICRRVDNEVVMFMKSV