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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028197 Open in IMG/M |
| Scaffold ID | Ga0257110_1000566 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17678 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033826 | Metagenome / Metatranscriptome | 176 | Y |
| F051947 | Metagenome / Metatranscriptome | 143 | Y |
| F060923 | Metagenome / Metatranscriptome | 132 | N |
| F089555 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0257110_100056611 | F033826 | AGGAG | MALCSVSDVEQFLQVDLNSTVEASVTNTFIPYVDSAIKRFLGYDVERATFTETFDGSEQQDLFLRHIPIASITNVIEDSNTLVSGNEKDYVHYDNGRLRRIVVRWSGIKPKNISVTYVGGYQAADIPQVIKQTSAKAAARMLMVSLQIASKADSGQVGSHLADNTASSSFDIPITERIGDYDIAYADVVIQNLTPVLTQGDMLILNPFKSRFFV |
| Ga0257110_100056618 | F060923 | AGGAG | VSKVEWEPENETFKEFKQRRSASSGVSGMGQKKREGTGKKNLSELREKALQRANNTCEWPGCNSKKWLEMAHLKAKGMGGANRDISDDPMNVCMLCKQHHDIFDGRQQIGSQREYTELLKGFLILQWRMK |
| Ga0257110_10005665 | F051947 | N/A | MGIRKVGVQHHESMKFPPDGEIIFREWAVNNTAITNVCSTRVATRLPRNATLPFLTFFVSGGTMVSPTGDAAVGAITVQLNAYAGRWGSGTSSQPDYATAYKLANGVAEAAFKTAKTIVHTTSTTTKAVIYGFDIAEMPARVEETDTGLGHYELSLIMYYRGLN |
| Ga0257110_10005667 | F089555 | N/A | MPLRHKLLPETATIQTVSDSNIDERGLPSDNWANTYTNVKCKFISSGVEEDRDGRNTTTEAFNVYLEKGVTVTPGDRLKRGNDFHEIVMVQPVLDRYGVECYKLLQTFVSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |