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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028197 Open in IMG/M |
| Scaffold ID | Ga0257110_1000434 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20736 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004144 | Metagenome / Metatranscriptome | 451 | Y |
| F089431 | Metagenome / Metatranscriptome | 109 | N |
| F099420 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0257110_100043422 | F089431 | AGGA | MKEKTDKNYYSGEKIDDLVDAVKKADHTKQEGVTQQDESYEKVMYSDQQMEEHKKMDNIFKVDGVPSRWEHNKLRANWHFDPFGDPNEETFVIPCRFEGDFQPAVNYAVEHSKEMTIGNYRNRNLSKQDKDLHDGEIQDVLNASGKEDVSSMYHDMIVRSRFKEGEENYYAQRNPAPEYEILLRMIDSLEVEVHQSRMHIQKLGQVTPIHIDQQMRYARPGWRKIWTDAGADKNPLKLRRFLVHLQDWDYGHVWQFGNTYHQGYKAGTCITYDWCNMPHGTANFGFTPRVTFQFTGFVSDKVQHMIDNPDPNRIIKV |
| Ga0257110_100043424 | F004144 | AGG | MLQWFQKSIHHLKVETGWGYFYHLWHSLKNSWTLLVIAFKSTVHGLIPSVWKADAPKGVIRMYHQIMRIEHIEKMDKLRKLPKNERYKSNKPIDPVE |
| Ga0257110_10004349 | F099420 | AGGA | MQLGKYHCTIDEVTYDRLELLDFTNQHKHNIMQFGDYMEYLSPEKREFNPKRKGREGMNAIAVQKTEGKDLLEYPIVKKYVDMFNFKSPINPRDIDLLHYDPGYSFHPHTDHYMWCGIMFPIEPEDAGEPISFYSREGQEPERNVNYEKRGWTDEDIEYNHYYSNKHPTLFNGMIVHGVPKISKERIYLRIKVLGEKFEDVVEKLKNNNFVIDN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |