Scaffold Ga0257110

Basic Information
Taxon OID	3300028197 Open in IMG/M
Scaffold ID	Ga0257110_1000272 Open in IMG/M
Source Dataset Name	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028197 Open in IMG/M

Scaffold ID

Ga0257110_1000272 Open in IMG/M

Source Dataset Name

Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26445
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (27.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

26445

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (27.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: Northeast Subartic Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Northeast Subartic Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F013089	Metagenome	274	N
F022880	Metagenome	212	N
F026567	Metagenome	197	N
F067697	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_100027210	F022880	N/A	MFFVTAQKRTDRLTICNACEHFVEKTKSCGDLVTEAFTDSKLCGCHMPTKTRLKVASCPLGKWEAEIKQADIDAIKTFLQTENQFRTNGQLAKLYSKVTGTNTQASQCSSCNRRMLQELQKLVNETE
Ga0257110_100027213	F067697	GAG	MKQGYYGNFYERLKIQEFRDCIIKHEEERAAILEQQHKTVTRGAEDPKNVKPYDPEEARLKWRMKNNPFLIPGKNDSSESESEAR
Ga0257110_100027217	F013089	N/A	MGQSKIKTIQPNGTYDSQNGLMYKFEIELESGDSGEVSAKSESRWSVGDEVEFEVTPSKWGDKMRLTKPGFTPNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRSTLISKL
Ga0257110_100027222	F007366	N/A	MRGTPLKETKLGKWFKEKSPKVFNLIAEIVPGADALKALNALIDNTETSDEEKTKAKLLMEELETADRANARNREIEITKNLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVQDKEIFFHILGFAEGTLVGQVVNYYFGSAKK
Ga0257110_100027238	F026567	GGA	MKAIKILFLVVLAIVAIPVGIVYSFGESLFLITSDILRSIWRAIYHLFRDVSIIVSVTASKFLNRLLMDSGVPFGNHSVSAVLGANQRERTLTGLGLWLTLLLDSIEKNHCRKASERAGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257110_1000272

Overview

Ecosystem & Geography

Associated Families

Sequences