Scaffold Ga0257114_1079980

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1079980
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027808	Metagenome / Metatranscriptome	193	Y
F043147	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10799804	F027808	GGAG	MTDHEQQYDPQLEWVIDEVIHAITNKQCTETVWYEVYENIYQTTADDGWEEYQLQQRLEAEGEALFEKERDSE
Ga0257114_10799805	F043147	AGGAG	VNKVPPVERDLLTGGLTFESASRWCNFLAEEFDWQGNRSLSEYYKRRSQELSVAPTGSLHDRRLEEAIKAWKR