Scaffold Ga0257114_1065655

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1065655
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1559
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088811	Metagenome	109	Y
F101079	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10656551	F088811	AGGA	MTDSNGKCIKNITAAAAGEGTYYIISYRDGSCKTYMRATGVITKWLQNNG
Ga0257114_10656553	F101079	GGAG	MTSHTKSQIQTLLSNPAYTDEALRILGENQTPSELRSKSTHINNDIGFSAAYGTTGTRLFEFVTGINTKTGEKKWQPKSLVHPAAQRVFGRYIRNHGLNSALELGQKIAGIHWKQLGALLNWTPTHLPAAPVQTKRKADGTLDRVIVRGVEFQAHKGKAIRVLFDSKRIWLPVSQIDIDDTSGEITMPRWLARNKGML