Scaffold Ga0257114_1056107

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1056107
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1725
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009104	Metagenome	323	Y
F070570	Metagenome	123	N
F092736	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10561072	F009104	AGG	MANDHAKDRYDPPALGSDFDKDYFGDVNIGEVFRLRPDSKAKVFRKVKDGIALDVKEKKEVQLTERDLIYVKS
Ga0257114_10561073	F070570	N/A	MKIDNEALAELRKIRAAMDNAYDKLNKPLYEKNIATKVSYTETIPFNLIQENFEFIVEKIKILEESVGVE
Ga0257114_10561074	F092736	GAGG	MENKLGLYISNLMTTIVDKEEKLFVRKLAFNELENIWGDIRSVLTTHVSEIKPDPFQKEQNKNRNKKQTEINFGVKNENR