Scaffold Ga0257114_1034601

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1034601
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2346
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F025387	Metagenome / Metatranscriptome	202	Y
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10346012	F025387	GGAGG	MKRIEKVGEMLVRTLTYPIRATIGVCKCIHKSTPDTLDMPFEIKLKTEEKNADKTTS
Ga0257114_10346013	F050676	GGAGG	MQTKLPVKSRVADKYQPMLTYYAELIGLCHETVTKTESLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSKINQQKDIA
Ga0257114_10346014	F003834	AGGA	MSSTKTPIRQAEMDHIDHFLETKYDDRKNTLKTEMQDIIDKEAEDNFEAFKNKLNVNKLHKEVYAFYKDHEKFANEMDTILLEKKGKLDNAINTLEDKLEQWKKVRKWESEISRSLLKQPDELDRLLKKLCHEETTRDFYKGPRGKSLQMLDMSKEYCKNLLNAGQSLATVWKTIDIEMSKEKINTSTIPKPEFLAITK
Ga0257114_10346015	F003677	AGG	MVDEALYFFEKDVGKKVYEIEYEVTYVTKWQVLAEDRDKAFDVWLENHKLNMSTEDGHNTVCSYAKDYTKMGNVKEIAKIKYDSKDNGEVYADES