Scaffold Ga0257114_1025327

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1025327
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2850
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10253272	F087902	N/A	MTYTNHNIKDVAASGVVKAGHGVMTAVHVTKLGASGDKIVFHNGDSNSDPVEFTVYGESIQNMDSIYRRFENGIFAEVTGSTAKYIIVFK
Ga0257114_10253273	F034394	N/A	MVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIVRKEAEIDRRIGHTWKTKKITREMHSLPLLYTFGWGTPVFLKHRHILPLDSSLGDKIEVWKSETDTWGDVLDNTQWYNIEYELGTLFLRGFLFTILRNNRIRVTYRYGGEDYAGDTTVPLDIADAVIKMTAIEVMNTSFRMDEIPSGGSVSPSESKRYWQEDIDLCVSNRREVFVIP
Ga0257114_10253275	F042629	GGAG	MTITTYDAVDDVISLIKDKWSTIRPPHITKVWEKRTVGFIDDRSDEIIVSPKGEDVQVFGVGGSAYWHEQVIELDIRTYQDIDRHNKVVKEVVKIIKDNMVGSTYTDLRIIGSYSRNFQFRNMFDYVVTLSYRKANPA