Scaffold Ga0257114_1010813

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1010813
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4806
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040050	Metagenome / Metatranscriptome	162	Y
F040051	Metagenome / Metatranscriptome	162	Y
F071665	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_101081312	F040050	GGA	MNDLFEIVEDLEDIDTFGSDTTAFEDIIIKWKARLEDAQDAAERQFELFEMDDGA
Ga0257114_101081316	F040051	AGGAG	MLDALLDDIEAVLKKYSGTDWEIMDVDFSDGGAVFTVSAGIKEDEDV
Ga0257114_10108133	F071665	GAGG	MKRNLRTAYNQLNKIGCPTIEGGYYGEDSFRISAESGDEHHTWADYYMMTDGDCTGYIMGVSNRINEILDPLGLYAEWINPGVLAVCEA