Scaffold Ga0257114_1005073

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1005073
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7765
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F003357	Metagenome / Metatranscriptome	492	N
F004368	Metagenome / Metatranscriptome	441	Y
F007531	Metagenome / Metatranscriptome	349	Y
F015099	Metagenome / Metatranscriptome	257	N
F016276	Metagenome / Metatranscriptome	248	Y
F036785	Metagenome / Metatranscriptome	169	Y
F095149	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10050731	F036785	N/A	LLIYLAVAVKSLQNEVFWDKSIMKPAIGEYHGFAEGKVEMQYNIQTLLNNALEMAINEQEKQ
Ga0257114_100507316	F004368	GGAGG	MTGTRLIDIVMDRHEDFLYEDSRAMKLTPYVMSERCLQVEISNIFKDHKSGDYDTLTYILEGGFKGYHKMDSSELIEEYKSIEEQWYNLYECSELEFTPYEEDPIHKLEEEKI
Ga0257114_100507319	F016276	AGG	LVHRTLSRRIRGVIRLMIIRGHSGQDIRRMIWRRKFKLLTVAVLILIAVTLIGCSKPKPTLNALDKFWDTLGGKTTDLVEETK
Ga0257114_100507320	F095149	AGG	MRKIILIGMILAGMTGFAQADVNKVITDITSAPVKLHNHIQSEVENAKAYQKNSWADAKAQFARLKAKFIKN
Ga0257114_10050734	F000302	AGGAG	MINTMTQDTKDRIADLERQKIDLEDQLETLGYAGNLVRMHKIEEEIYEIEDTIKKLIF
Ga0257114_10050736	F007531	AGGAG	MLKKIEKQILEFAKDTGLTERREIVHGTLYVKLHEEKECDTFHRAIRTFYKNQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEMMDPTDIDDKGIWSEFAEEEILANVDTMIDIENDAKEGR
Ga0257114_10050737	F003357	AGGAGG	MTRNSWIVKQVYTDAKENLGWLFKVVLLAGGFIAGIKLLMFFNVPKEILFPVMWIAFILVAIYKWYSMKYDWKKDDKAYDRASKRYMKKLKGGK
Ga0257114_10050739	F015099	AGGAG	MSHSSKNWQVIYRKQNGLSGCFVWAPDEAQAEKKFKARKEFEYDPEFDRDPEEGNIRSIYEYVAPQSNVASKTKMDELEAFVKFPQFYPFLKKYDSGDEKALAKQIPLTPDNIAIIDGIAKVIPIIRRYRGPRTRGGFMRECHKQDAERVSIYAR