Scaffold Ga0257114_1005049

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1005049
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7786
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014667	Metagenome / Metatranscriptome	261	Y
F051198	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10050491	F051198	N/A	VKEKVRMIMTKTSKTSHLKVKEIKQHQALTYIADKKYPDLNEDERVEGIVELWKNYRALMQDNFWLRGNENDYKGAYLEKFYKNPKWWVGIYDGDKIVGTEYFTFRGLRMFSGFLFADSVEIAKELGTQLYEQAKITHPKLDIVESLHITNVDEYDISFREDIGYRAWSWIDETDKIRELQNVRISFLKKIRSEWEEQNND
Ga0257114_10050498	F014667	GAGG	MQKVSQLIQTQQAFNSNSYNNLTPVLKEAINDVMKLVKSEGNLIFNFENAIEKVSKFHNVNKDDIEEYFDDELKEQIEE