Scaffold Ga0257106_1192913

Overview

Basic Information

• Taxon OID: 3300028194
• Scaffold ID: Ga0257106_1192913
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 702
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058106	Metagenome	135	N
F080521	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257106_11929131	F058106	AGGAG	MTQGTFQSFTDPNSSSYKSPEERKQYIDEQVALGNPKYTERNTWLKENADKIRISKLEAQVNEIL
Ga0257106_11929133	F080521	N/A	IDSISSVKDKVIDKYNSTNINPFPKNVNVTVKFDLVGTYSDLLKKFDSMSDKDMQRVVDILEKKSDVIQKIIMKQLDK