Scaffold Ga0257107_1030822

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1030822
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1696
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F012582	Metagenome / Metatranscriptome	279	Y
F037260	Metagenome	168	Y
F055198	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10308222	F055198	N/A	MVVYMSRFEEASCKVLGVILFLIICILTFQLMGCMCPIPEAPIELEYIDEVNTSHLV
Ga0257107_10308223	F012582	N/A	MTEFHKKLKHLSTTMLHWAEENKIRTKRNGDYEIPQRNGVDWKSDFKFVTKLDSMLADGLDVKLKKKEMEMCNQLYKYYGSVYVKI
Ga0257107_10308224	F003091	GGAG	MSTHPVKPITNQVKGNRTQQQKYISQERYLEERYQISVGLKGPKRLEGESHEDFHVRRKAENGLLHEYSRGVWMTDGNCTALNPPCRNCE
Ga0257107_10308226	F037260	N/A	MAKKKKDIPFHVKHNYKKWTSDQGYSFWAKDEQDAKFFLDKTEGNLGSLKEVEATDV