Scaffold Ga0257107_1021629

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1021629
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2055
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F020372	Metagenome / Metatranscriptome	224	Y
F028526	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10216293	F002348	N/A	VETVETKEKWMKYGGWLLSLLSILIGASFLWPHVHVALLGIAFIYLGIRIFNFSTFDEYKEKRIKLLRKLLN
Ga0257107_10216295	F028526	GAG	MEDYLGPVNTKPELFLKLTNRISNREYTMNFMEDRNGRKAMFYNYKGPEFEEGDCVLLKATIAEHRLDKYERGKPLTYLNRVTVLENKGMI
Ga0257107_10216296	F020372	N/A	MAEENRVQIFINKKEIQYSHQNIVAAINSFLPYLTNDDLDEMMKTFATLKDHRRQKEYLAKLETLKHSWPYPDTINKDNTT