Scaffold Ga0257107_1015968

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1015968
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2425
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025519	Metagenome / Metatranscriptome	201	Y
F029783	Metagenome	187	N
F054947	Metagenome	139	N
F078832	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10159682	F025519	GGA	MKDIKNNTWKYGSLKLSAMTYTFECDNKLCKKKIVCLMSKYDESEYFGRCNYCSSGRLKQIKNIDLKSVLQKIGRDIKSRRISSND
Ga0257107_10159684	F029783	AGGAGG	MIGELSGDTADFLNEIPWFDGVIYIVMLMGLYVFYKWINKKFR
Ga0257107_10159688	F078832	AGG	MMKDQNITDELVETYILHNDFEHKAGEMYECPGGHIWHWSDIVDTIENMTPPELYNLCFLAEQDSINVNNEINKLERLYG
Ga0257107_10159689	F054947	GGAG	MQMVSKNKIGKIFRDFNNEVLQELIPKDMVVPKLRMQFSMQNLSWLCRNLRIKNKQHPEIKQTMAKLNTLRMKILLKGK