NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257107_1014552

Scaffold Ga0257107_1014552


Overview

Basic Information
Taxon OID3300028192 Open in IMG/M
Scaffold IDGa0257107_1014552 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2545
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004418Metagenome / Metatranscriptome439Y
F024128Metagenome207Y
F027651Metagenome / Metatranscriptome194Y
F105352Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0257107_10145523F024128N/AMVMITKKDAKEYLEKTKRILDRGNASLSDNLKYINDTVSHLEINRFQGIGDIMYQVVAKALTINVVTGKKAFVVWAVQEENDMETAVQKAKDELRNRICMGAPVLQFAGPEEDVRKLTEY
Ga0257107_10145524F027651AGGAMNMKQKVEKMNLNWGVIGLSNSINKNYHSWLSCVTDKKDYCIESDKFGHGFGVFNGSKYFRISLVYGNSIIDQKNSKLYKTAHKDNHLWGYVVKADSENHKRGDILTKNYKVVGNVLDGNTSNLGMPTSHYPNYTDCWAGAEIW
Ga0257107_10145526F004418N/AMKKIINWLKDDWKNHRFRLFCETVGSLCFIAIYVLMAWYGEAVSILNIFLIQLVGSSLHIINAYLRNSVNLIALNCIVIAIALFGLAKMALSV
Ga0257107_10145527F105352GGAGMSYCGRIRNSKENSYKLEIPRNQFDRIADAFEHQVIDINGYDVNKDTVIFTVSEKQRLWFEKIAKSKKIKWKGKIKVNPYYWITEMFLSRNIKRYLVK

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