Scaffold Ga0257107_1010312

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1010312
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3066
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022757	Metagenome	213	Y
F036470	Metagenome	170	Y
F063075	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10103122	F022757	GGA	MTKYNKPLDRDYFKKKANPKAKKGPQLTKCCGENRDHVGINVKNKEDWELVELHIEDHLRDYPGIKNVTPISCEICGRLIEYSSTLNDMDCE
Ga0257107_10103124	F036470	N/A	MNKDIFNIKDIKDFVRLLVFLVVSPVIGMIMLLGLIATSVAMVCMYLKDFIMEKFYEQN
Ga0257107_10103127	F063075	GGAG	MSRHKRLINLIDEVNSLDGLVIDWQFANAEMGFDNFVAPIQDEQSTYAYTA