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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028192 Open in IMG/M |
| Scaffold ID | Ga0257107_1009790 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3158 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001625 | Metagenome / Metatranscriptome | 661 | Y |
| F005948 | Metagenome / Metatranscriptome | 385 | Y |
| F034394 | Metagenome | 175 | Y |
| F084350 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0257107_10097902 | F084350 | AGTAGG | MSTIGIYDAIDDCIDMIKKKWNNTSGGVVPRVERIWDEKTIGFGDMEISKGIILIEAMDEDVKYFSLYGADHMHTITLTLDVRSYQTLDRHAVIMKELARIIKDQIRRDGFVDLRIVGTVPLSRLYRNMFRHMIRVTYRKMNP |
| Ga0257107_10097904 | F034394 | AGG | MATTYCTAGDVSDFLRVPITATTTPNTAQVEKIIKRKEDELDRRMGHAWRSRKRTRELHDLPLLYTFGWGTPLFLQHRNIYEFDAAQGDKIEIWSGAAANWEDILGNNTWYDANYERGTVHLRGFIFSILRKNRVRVTYRYGGEEFAGDTVIPGDIADVVIKMTAIELVNTSLRMDRLPMGGTGIDLQAVKSRWIEDIEKCIDNRREIFIIP |
| Ga0257107_10097905 | F005948 | N/A | MVELNHNVVSFNSDTLIKGDHGVLVHVYVTKKGSGTNKIQFRNGTTDSATPIECTIFTAIEGNYQNIHRRFENGIFADCDGSAEVTVVFK |
| Ga0257107_10097907 | F001625 | N/A | MALTISTSDWTNANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATNGVSADLKEGRISTLVAVIPTFTDSLHKVEYDKTNEKIKLLTVGGSSGAAFVELANASNLTNSKVFEFLVIGY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |