Scaffold Ga0257107_1009472

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1009472
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3216
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014154	Metagenome / Metatranscriptome	265	Y
F054103	Metagenome / Metatranscriptome	140	Y
F064802	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10094721	F014154	N/A	VPEDIFKIEPVGNKSLVVENKHKTISPFNSAKHLKTANLPALCNQCVYRSVEDGGNGKCPKYEADAVCSIRNDFINMINILDTRNPEDLKSMMDMLAKL
Ga0257107_10094722	F054103	N/A	MKIYFNANNKATLEALERCGVRNVLLSHRYSYANINKFKSKFDSIFIVPGTKGNPDKYHEFLKKKKEYYDYATQFDVFYNMDETLKYLEKEREDGIDWTLPILQENYLQHISRLRPKTGDYICIGEVHGKLETEDQIRKLPQNVEYHGLAKGKYIEKRPFKSLDTSGWISAAMSKKTEVWSGNSTFSLFFGEKGRGMKSQVASTLERFSDYLETVGISSKSVLENDYYSLLKLPMAVLYMPMCKSLGIYDINFKQ
Ga0257107_10094723	F064802	GAG	MKTEESIRDLILFTKEKLLHENVDPTGMLPQTLIPPQLIDIPDDERRGVIKALRWVIADEDIFQRE