Scaffold Ga0257107_1008425

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1008425
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3418
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F004439	Metagenome	438	Y
F035798	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10084252	F004439	AGGA	MKSFKQHLNEARGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGDGIKSIAKLQGQKKQISAFFEMQSRYMEIGVVTQGGVHSVLEMDADVLLSASGDVMSHLDQQGRRWTSISDLKETSRWTKFAAVEKDLEKMFDPLVKKYLKKGEFQENATVWELWRMAERKVDKKTMSLIIKDYMDGMEKVIKKNIDTFSSAMLSYAKKRSTNLSWDEQIVNNIKVKTAHFFKLKLLRGKNSLSPEQEELIEFAKSKGWSIKMWDAAIELEAYTRQVAAKELGK
Ga0257107_10084253	F001493	AGG	VKSFKQHLKERFQEWQSGSAPAWTESLSTMLFDLSRAGLKDLKIPLSPSIMSRVWPKSVRSKAFHLTDDDGIRKLKGMQKGKKSISAFYNIDDYIIGSGIKTHGGYVVELEGDVLAASPDDVSSQPDKSGRRWITFSSLMNPSTDADPGLNGKAQLRGIETDLQNVLEEILRKNGEDVETGSQANIIGLQWSGLGKKTGGKEKSLIIKDYIDGMEKIMKKHSKSLRSVLTDYTKKKTLEPDPDSGDVAMWDELVVNNFTIEKILVGPEFVSDFLEDDDIEGFPFELFDDAGDMVDYINRTLR
Ga0257107_10084255	F035798	AGG	MKKFKQANADLYEISKEEKLAHDTALVTEAGDDMCSIPLEKLRSKVMRDRHKKMCVIPKNVNTKSMWSKAAQKAAGGRHKLYNSLEEGPADNLVVLIRDITSQMIGAIKKNDQKKLVGLYKNLGKVIK