Scaffold Ga0257107_1005374

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1005374
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4379
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F005749	Metagenome	391	Y
F013775	Metagenome	268	Y
F015023	Metagenome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_100537413	F003091	AGGAG	MSMLPRKPITKPGEGKQRQKYISQERYLEERYQISLGLKGPKRLQGESFEDFCIRRKAENGLLKE
Ga0257107_10053742	F015023	N/A	MIKRENKVVLEKNIKDGVLKFTEHLNNTMDKPDGYSYELNTRGSKYFKVEMLSHGSRSVYCFIEKSTGNILKSAGWSAPAKGTRGSVLIVDSYKHSDWSGGWLYKIFGNVYGMVG
Ga0257107_10053745	F013775	AGGA	MVEKRQYETVKEFAKDYRTEIIPMMKSKGFTLSINTSKGSYWNDGRMNFQIKKVPSNFYVWTNEYNRYNKTEKSQKLINAIRDRVKNLISVTTDLDVDLNFDYHKNIRYKEIPEGWDTNE
Ga0257107_10053748	F005749	AGGAG	MKKSWLLMMSFDEHDGSSNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEVDKKSTYDKIVDKEDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA