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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028192 Open in IMG/M |
| Scaffold ID | Ga0257107_1003789 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5268 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000245 | Metagenome / Metatranscriptome | 1468 | Y |
| F001930 | Metagenome | 615 | Y |
| F034993 | Metagenome | 173 | Y |
| F039345 | Metagenome | 164 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0257107_10037895 | F034993 | GGAG | MKSFKGYLNEFVIQSTSDYVFDTMSNSISDIKIPISGPMFKRIWPDTIRATVFHSTDTEHLAGLKKLEGKKKSISAFFSMMSTQMEGGIATDGGVVVEMEADVLISAKDDIMSAVDKGGRRWVEMSWFENAQGRGNPVGFDKVEQGFNTLIKNLVKKHLPSDHFANPHLLAPLEVWSDMKRQLKAGTPAGAKKISLVIKDYFDGVEKVIKKNKKVFETIFYGYAKSKRQTDNAWDEQIVNNIKIKKVHILSDEVDLDGLHDMYPKGLVHEFPDVKFWDYSSELEIYTREVVKKEIGR |
| Ga0257107_10037896 | F039345 | AGG | MKKLWNRFTAWLSGWPEPKAKREREDVYLFAEEEQMIRENNKNIGKKPKKKTEIMN |
| Ga0257107_10037897 | F001930 | GAG | MKSFKGYLKEDVAWLQSTSKMIFDFGQMSSMKIPLTSKTMTWIFNVQLPRVTVFHVTSGIGLKKLKRLQNKKKSISAFFNMNADYIDQGVKTEGGVVAELDASIIMSSRNDIMSMPDKTGRRWIELHDLDPDEKMHAELEKMLIDLAIKHDPRNKEYLKTVPEIGIGVWYKLQTDLLTKFDPAKAGKKMSLIIADYMDGVNTILKKHKKDIQGKIHGYIVRRGTVAVKHASGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTFNTARREADWVKTSIIPILGKIPHKHWKSAAELSTYITQVADAEVRTFGGWARKK |
| Ga0257107_10037898 | F000245 | AGGA | MKTYTEFKESRLDDKLDKIVHDEIKKRKLAKHPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVYLRKMPPPASKDTMAFNYQLEDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |