Scaffold Ga0257107_1003158

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1003158
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5789
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002006	Metagenome / Metatranscriptome	605	Y
F009177	Metagenome / Metatranscriptome	322	Y
F090861	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_100315812	F009177	N/A	TTSIETAYLFDIFPNGKTGDATYATAADVAFYNDGAQYASTRDTMILNSSDGAPASDAGDHVMMENDPYDSIQMEDNSMIETEDGEAILLETQDNVGTSSFILFETGSQDADGVIKIRVNGEDKYIQLYNLVS
Ga0257107_10031583	F000245	AGG	MRTFKEYKIDKEYDDYVIDEIKKRKLAKFVINATDDYKMKKGKPAFTFPSPTGDMVIKVWLRKMTPPAPKGAMAFNYEIGDK
Ga0257107_10031586	F090861	AGGA	MKTFKELKSKDEGYQEDQNLADLVGGEASDMIKALKKGDVRKAQTSYKAIGQLLK
Ga0257107_10031587	F002006	N/A	MPEELQAVKLQVGLLQQEVETRGRQMDTLLSKLDSTADKIVELTVEIKSLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVSDSIHKLEERVRAVEQYKSKLMGIAITVSAGVGLAVASIMGLLNIFKD