Scaffold Ga0257107

Basic Information
Taxon OID	3300028192 Open in IMG/M
Scaffold ID	Ga0257107_1001007 Open in IMG/M
Source Dataset Name	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028192 Open in IMG/M

Scaffold ID

Ga0257107_1001007 Open in IMG/M

Source Dataset Name

Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10493
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10493

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: Northeast Subartic Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Northeast Subartic Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

500

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F064801	Metagenome / Metatranscriptome	128	Y
F087318	Metagenome	110	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10010076	F087318	N/A	MGISVHVYDTVDEYVLRNKHTVSPKLEVNETSLPLQDIWITEDEKIMVVLDCERYFDRPDVSRSISCYQKNNIDKYLKGNERLVKYDDVSFEPKGEKIMFFKKILRKPQIFFKVGRFWGDKPKKNVKIDWTKKFFNLASNRIEFILLTPISKVARK
Ga0257107_10010077	F001235	N/A	LATKLNVDTGGQDIGKKLWDKHQKDEYTHVDNYKEAICLNCFKKDAASATIVTICGECAGKRGREPLLAKMSDKFYGLCYFCGEHKFHIEEINARFCRRCHRKIANVTKEYNKKGGLYANPFWSRMKKKNGKDWRQLFSGNLGNRR
Ga0257107_10010079	F064801	N/A	MGLRSTLSTVLKNVRNINKGYTETTTRPSVAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKFKFKCANCGKEFQYKPIKNDLKDEQPFEQNQDNESSQLPRSDAKKAIAHELNPEQDMECDTCGSNDLIRPIPENRKLLETMLENPVNGNNQTLEDLSRQLERDLEIADNAYCLILKNYKIDDRTGKIDTKNTEIKEFLRVDPPQVALIADSDGRIGYDDKRNAIFVCPRFEHRDKRLTTPKCDRCGAEALKAVLEVNSVYSIGIPQPKRVVYGEGEIIWKAGKYKPSLLYGYSPIYSVWSKAMALSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDVLEQKAIEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTEIRRELRMIIGAVFGVLPLYFGELPSGWSQEGLQVTITNRAIKWGQDILYQAFLRKFAKLVGVEDWDLRLKGGEENDKLRDLQIQGVEIQNMAAMQAMGFEVARTHTGEFKVSKNPIINPQMMMLEGKAADDEKPNTSGSKGRGRGTAAPKEDQQEMDGKPKKQRPSDKGGIGQGSPSSGKGTSQSKKSDPSINLEPKKFPDGITPANFEVVKRTLQSSIDFDWTKKRTVEELRKSSSMTVRDARELVKQELADVKRWEEEEF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257107_1001007

Overview

Ecosystem & Geography

Associated Families

Sequences