Scaffold Ga0257107_1000011

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1000011
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67153
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004630	Metagenome / Metatranscriptome	430	Y
F011529	Metagenome / Metatranscriptome	290	Y
F013229	Metagenome / Metatranscriptome	273	N
F045374	Metagenome / Metatranscriptome	153	Y
F076496	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_100001120	F013229	AGGAG	MTFEELNREFEKLTADSCADGVNDPLACAGIMMAQAMRIYKTALNENEFNIMTETILKSRNDIIEFENPTIN
Ga0257107_100001153	F045374	AGGAG	MICNECNSEPFQVTVKEELGFDNEAIELGLEVTHCPFCGANLEWAQRGGYDASEYDNDEDRLDT
Ga0257107_100001160	F076496	GGAG	MKRSKSTQAFIDANPDKFRIITPEETAKTLAKQSGGYFKGRSVMGPSKKKGKSS
Ga0257107_100001161	F011529	N/A	MELGFIMWVKDSKRARIHELEGVRLRSARLWLDKDGFHPFLDQDKLTKPDLQKSMGCKYDELPKEAWDVMDRYDEALARGSEYAT
Ga0257107_100001167	F004630	N/A	MSEHYKDDGSVAKIYQVVTGMDGEHSFFSITYKDPIGNRIMQEDFPYKALGYVEDAAANWTKGIKLLKG