NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257108_1131133

Scaffold Ga0257108_1131133


Overview

Basic Information
Taxon OID3300028190 Open in IMG/M
Scaffold IDGa0257108_1131133 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)733
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004906Metagenome / Metatranscriptome419Y
F036272Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0257108_11311331F004906AGGAGMATKKETENKTAVKTDSNEGNELTAIAVKSLTNLEEKVEAIDWKLWEIYNIVKNYVETNPVGVSAPAVSQPQPTAADIAAEIAKALGGVQEPEPKKSVVGKLFGK
Ga0257108_11311332F036272N/AFKGGYDNITFDISGNGNHAKFYNVEFANKSLKSNTERYLPYRRNGAYGYLSSYEDYLNLENLTRTERPEIMTNRNTFNKKVRSNMRDVNIDGLTSTRFRIVDRQGYQVKHEIIEVVI

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