Scaffold Ga0257108_1107837

Overview

Basic Information

• Taxon OID: 3300028190
• Scaffold ID: Ga0257108_1107837
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 822
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042009	Metagenome / Metatranscriptome	159	Y
F042565	Metagenome / Metatranscriptome	158	Y
F105371	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257108_11078371	F042565	N/A	TDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK
Ga0257108_11078372	F042009	GGA	MICSNCGERISKGIDIGHRWNLSRDLAFACSEKCAVEAPKNWLSENPTTLYKNKFNKKD
Ga0257108_11078373	F105371	GAG	MNKIEFKFGRKVVKTFDNMSDANVVLRKLIAIRNDDSNWEVGEYTMGNNIEIGLIAGFKIEELLEKVVDVFDSFSIWVNGNNVRKVWSKGF