Scaffold Ga0257108_1051253

Overview

Basic Information

• Taxon OID: 3300028190
• Scaffold ID: Ga0257108_1051253
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1240
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F015491	Metagenome	254	Y
F103429	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257108_10512531	F002874	GAG	MREKIDLSLNRSLEELESSYWEFIEATEGEDSTEWSGSVQEDISALEGYLMKMDIL
Ga0257108_10512534	F015491	GAG	MKQTKRQRRAKVPSRPQVTPRKWSKKPARIFDKQFDRFLYNELYVPVKKSWGEEIVKYERDMFGDSK
Ga0257108_10512535	F103429	GGAG	MKKGVIEILYDGEKVFCSRVDGKYMVREYEDGVEMGGSFCKTIEEAEARVIEYQNEIE