Basic Information | |
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Taxon OID | 3300028190 Open in IMG/M |
Scaffold ID | Ga0257108_1032731 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1568 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 1000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001048 | Metagenome / Metatranscriptome | 793 | Y |
F002874 | Metagenome / Metatranscriptome | 524 | Y |
F038414 | Metagenome | 166 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0257108_10327311 | F001048 | N/A | MKIKSTKQFWWRLNHLKRNGGEITVTDRTSEMDVKEFNRIESLVNKRVRWELGSEGYSIWSECGYKD |
Ga0257108_10327314 | F038414 | N/A | MSNIMTEEQRDNTINEFYKKRTSPKTIQIQDSKTTRSKAEWLHISTSEEDGEGQGTYDVGRRVMKRERLADKKLRAKQAKAA |
Ga0257108_10327315 | F002874 | N/A | SLNRSLGELESSYWEFLEATEGEDSSEWSKSVQEDLSALEGYLMKMEVL |
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