Scaffold Ga0257108_1026365

Overview

Basic Information

• Taxon OID: 3300028190
• Scaffold ID: Ga0257108_1026365
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1751
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024128	Metagenome	207	Y
F054947	Metagenome	139	N
F078832	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257108_10263652	F024128	AGG	MNINCTHLNEKPKNYKERGNASLSDNLKYINDSVSHVEINRFQGAGPIMYCVVAKALTINVVTGKKAFVVWAVQEHEDFETAVQNAKDELRNRIVMGAPVLQHASPDEDVKNLVEY
Ga0257108_10263654	F054947	GAGG	MQMIAKNKIGKIFRDFNNEVLKGLIPKDMVIPKLRMQFSMQNLSWLCRNLQIKNRHHPEIKQTMAKLNTLRMKILLKGK
Ga0257108_10263655	F078832	AGG	MSTNLNNATDELVETYILHYGYEFKYGEFYECPGGHIWHWHDLVNEVENMSAPDLYNLCFLAEQDKEKNEEYFDLTRGA