Scaffold Ga0257108_1026102

Overview

Basic Information

• Taxon OID: 3300028190
• Scaffold ID: Ga0257108_1026102
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1759
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031648	Metagenome	182	Y
F034394	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257108_10261022	F031648	AGGGGG	MVELNHDAVSFNSDTLVKGDHGVIVAVFCTKKGGSGAKCILRNGTTTSGTAEFTIFGEIEGNYQNIHRRFESGIFADITGSAEWTVVFK
Ga0257108_10261023	F034394	N/A	MATTYCSAEDVADYLRIPITATTVPNITQVEKIINRKEDELDRRIGHAWRSKKVYNERHRLPLLYVFGWGTPIYLQHRNIYDFDADEGDKIEIWSGASATYDDILSNSNQWYDMDYDYGRLYLRGFIFSILRQNRVRVSYRYGGEGFAGDTTIPGDIKDCVIKMVSLEFVNTSFRMDKLPMGSAGVDYASSKNQWSEDIEKCIENRREVFPIP