Scaffold Ga0257108_1009616

Overview

Basic Information

• Taxon OID: 3300028190
• Scaffold ID: Ga0257108_1009616
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2820
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020372	Metagenome / Metatranscriptome	224	Y
F042386	Metagenome / Metatranscriptome	158	N
F050431	Metagenome	145	Y
F105351	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257108_10096162	F020372	AGGAG	MNIEQKTNKATIRVYIDDKEMLYSHQNIIGAINSFLPYLTNDDLDELMLRFHTIKDHRRQKEYLSKLETLKHSWPYPDTILQPEND
Ga0257108_10096163	F042386	N/A	MNNAGLPCTYEEGEKGQFELFHGSRPYLKEGNGVPKFFTLTDVERKLGGLGEY
Ga0257108_10096164	F105351	N/A	MTEVWIALLLYTKTVTTHILQEFPSEKTCWEYYSGDQTFGKQLNDHQNKPITKDYHFKRPGAEYPIRLFTNRETKELMWLTCELQAGLDYSKRRYPLNILLPTPT
Ga0257108_10096169	F050431	AGG	MRYFIGAFVLYIIGFLGGDVLIASVWVGASFGFIDLMKQGNI