Scaffold Ga0257127_1082881

Overview

Basic Information

• Taxon OID: 3300028189
• Scaffold ID: Ga0257127_1082881
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 971
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F015812	Metagenome / Metatranscriptome	252	Y
F020816	Metagenome / Metatranscriptome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257127_10828813	F015812	GGAGG	MSKTLYKKLEDICAREYVVNKLSEDKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRIEEHLSYMVSRRLADTHIGTNHD
Ga0257127_10828814	F020816	GGAGG	MKVYEITVSTTVQIDSEDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEVDDE
Ga0257127_10828815	F004856	N/A	LDGTKPKKIEARYSAYLSWDLDELGIDWDEIEDWDLLRADLHITFKDGTQKVYENWQDLDIDYKHNFEEVLILDEDWHEVEGLN