Scaffold Ga0257127_1006828

Overview

Basic Information

• Taxon OID: 3300028189
• Scaffold ID: Ga0257127_1006828
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5498
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F023615	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257127_10068283	F023615	N/A	MNRFELEDAMSDLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWGIFEQLIKNGTISNKEKQND
Ga0257127_10068284	F016956	N/A	MIELEKSWLAPKKAQLAIIDLAITHIKKVEINPDVKTEGDNFDYWNSYELEDGSFVDYNIHCGDEWTRVKQDGSGEYEYTHPSTWSWDVACYAVDPPNEENQYHQIDTDREQYLFSYNKKGDREVEFENAS
Ga0257127_10068286	F007770	AGTAG	MSGEGHTTSFKRTTQTTKSNKQLLEEFKGLVYSSKKVMSHMKWYGKEHSVELIEHGDEEQPKWRQESVAIKDTFEFYISTYESWGEDSNYYECHKTEGSFVSLAMEFAEDNNLMYFPDGFPAEWIETETINGEKCWNHFNVKPDDKNIDMICEVWYHYGVEKLQNDSSELWGKAKQKIKQLMEHEYAR