Scaffold Ga0257127_1005842

Overview

Basic Information

• Taxon OID: 3300028189
• Scaffold ID: Ga0257127_1005842
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6148
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003219	Metagenome / Metatranscriptome	500	Y
F100735	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257127_10058422	F100735	AGGAG	MHYETQSTELTQPTHLTSLATSAILVAVDVNVWSATKQDRGISNEVTKGKKADPNAGRFVKNLLANNVYHKNLVNYRQTIYNWLKAKTYRWNNTQDLLPTVALEDFKAEYDKHELEFDRLLTEFSKNYESIKSNMAFAQGDMYNLEDYPEIEVIKKKFGCKLYISEVPSHDFRCSVAQDLADDLKANYQQQCEEIVTNVLHQQTGRVVEVMESIAHCCGNQEVTTKDGIKTKKRKIYDTTIEKAKDLCRTIGGFKYVDNEHSRKLVSVARQLDDTLTGISTEALRDSDYTRDKVKSEVEDILSKFAV
Ga0257127_10058426	F003219	N/A	MKESIETLDQNNSNQTVVLPHIEDNIPLPKNAREALPEMSPDEELTMRAHTIKVISDIQDEVIEPSDDEMETAETIAKEMMKNPELKPEFGNYPNETIAYLAGLVNQTSHMVAKDLAEIKLSVLNGLLQEAAMAKSPRERISAWKAVGEIDGVDAFKKKTEITHINKSGEELEKELRETIEQLKGKVIEGEVIEDDDDD