NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0257118_1015349

Scaffold Ga0257118_1015349


Overview

Basic Information
Taxon OID3300028173 Open in IMG/M
Scaffold IDGa0257118_1015349 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_150m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2400
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)150
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049035Metagenome147Y
F089043Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0257118_10153491F089043N/AFTSGPTYKSMFKDMGLVLDENTGQISSNGVFAGGSSTDTITVGGYITTEDNLGNSFGTDFIVHEDGFGGKIETEDLVRSISFPNSGLNELDSYFPKFKHARDYALNRIKTDGTITQSEDVVTIQGVDATNIILLEDETGGILTEGGYFTVVLETGSQTFPTKYANALPTPARFISLKYQNGFSTNVSYASSNNEFIVQSNAEIDFTEGTADGESYELTYTDTSWPTTNGSSYWFMNNVENAPVVDDQSNILIFKTTTESTNFKVHFTIRAQKVHEHMAVYTGAAGTSTAASVLNTIDGWGDAFETGTGNYKDGYFYVSIYNNTDSDRDDQVMVFSDQNNASSTTLNFNDNAFKHRDDPDDPDTEISILNGEALTNSYSNGSFTLLTSI
Ga0257118_10153494F049035AGGAMANWNSKELQTPPIIEQIQKNAQNAITNLDTLLQIVQGGADVAKMFLMLSNPAGAIIKLAANEIIKLCNDFKEIGVFYLFINPNDEGYGGQTSREFGLAIKQDNNGLYQFKPSKRPGFGLDFVNVEYQKTLNIADLTSAYKDSKSRNKNDPKFEPPTPIFDNPPIWELGGYDPATWTGHAPVTSIPLANGVFPPEMKPSKVLQIMSESFDDEGDVSTFEVIISQRDAALANPVYTASGAEVDKNTFNPKRLQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.