Scaffold Ga0268285_1012995

Overview

Basic Information

• Taxon OID: 3300028167
• Scaffold ID: Ga0268285_1012995
• Source Dataset Name: Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2510
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F055719	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0268285_10129952	F055719	N/A	MLQQIVTKWKYTESDVDGPSVYHNKANANKMLQQIVIKWSGSNKTNKIKKKGXL
Ga0268285_10129955	F015582	N/A	MNTNIDPELQAEQLQDAKYLEELNHYVNTLATPSAEAVALYSAKLSNLEDIHTEIRSKYPDFMPIYDTSTDSECNHDLGKYQEQTYSISQRDMRRE
Ga0268285_10129956	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRKENNVAIYQRFNTDGTPRSYEVFIVKIVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCREIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRASGNKIKLDMTLNKGTKFTTKFLMSVLGVTQPVLFPIIKQWQKEGSIKVNGSVKGEGKGRPATEYIVV