NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265596_1001172

Scaffold Ga0265596_1001172


Overview

Basic Information
Taxon OID3300028161 Open in IMG/M
Scaffold IDGa0265596_1001172 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_60m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12826
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031354Metagenome / Metatranscriptome182Y
F059653Metagenome / Metatranscriptome133Y
F091296Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0265596_100117210F059653AGGAGMTNKEALQSLTEYENDNLLEKLLLDRGLATGGTYAAGNAKAIDLAAASLYFTLAAHPDLREGAYSTKYNSAQLIVMAKLIEQKYGEDAATVNGAAIW
Ga0265596_10011727F031354AGGAMKTTIDINDILYPIINVPTVKATIDGGVYRNKKPLNSELQDIVIIPLSNFVGEEVMNDAVFMVNCFCKNFANGTPDITNLRAIVNAVVAVIEAYNNTNNYYIFTITNQMLLQDTEQISMSYVNLRINCLIEK
Ga0265596_10011729F091296GGAGMVMKRYPHTATISYYGPGTTNSLGIYTPGTLVTIGIACNIQPNSTKYIIGKSGNMIGYSYNIYSEMFDGVDDVPADSKLTFFNKEHMILQLFPYQKHLEIKV

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