NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268336_1022742

Scaffold Ga0268336_1022742


Overview

Basic Information
Taxon OID3300028152 Open in IMG/M
Scaffold IDGa0268336_1022742 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069643Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0268336_10227421F069643GGAGGVRSGFGVHKMHHFVLPKLLLVFSQRTCPIHFFRPQTKFLGGFSRFRCREVPVVTSGFGVHTMQHFVLPKLRLIFSQRTHP
Ga0268336_10227422F069643N/AVTSGFGVHTMHHFVLPKLRLVFSQRTCPIHFFRPKTKFLGGFARFRGREVPVVTSGFGVHTMHHFVLPKLLLVFPQ

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