NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268336_1002546

Scaffold Ga0268336_1002546


Overview

Basic Information
Taxon OID3300028152 Open in IMG/M
Scaffold IDGa0268336_1002546 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1018
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000255Metagenome / Metatranscriptome1449Y

Sequences

Protein IDFamilyRBSSequence
Ga0268336_10025461F000255AGGMGRIGFVRCEKSRSDFMARTFVLIAPAHPVLHRVSCSYETIPNAPKHYATHQNMSL
Ga0268336_10025462F000255AGGMGWIGCVRCEKSGRGFVARTFALIAPVHTILHRVSCSYETITNAPKHNETYENISLGSNGVDWVGSLQKIPT
Ga0268336_10025463F000255N/AEKSGLDFVARIFALIAPVHTILHRVSCSYETIPNAPKHYAMHQNMSLGSNGVDWVRSL

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