NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268308_1003281

Scaffold Ga0268308_1003281


Overview

Basic Information
Taxon OID3300028151 Open in IMG/M
Scaffold IDGa0268308_1003281 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1047
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019773Metagenome / Metatranscriptome227Y
F040723Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0268308_10032811F019773N/AMKTHIEYPDIFFXKYNSPYHIAMGTYVLIDLLXAGGSVAPAQPTSLRXNXGIFAQTCSTCLEGLYRKESSGAHPCRAIDRAXEPRIPSPCSLKAITHATGSKIGSSRSCWNRGTEYYPVGMKTHIEYPDIFFENIIVLTSLKWAPTFSSIYYEQVALLHPPNRLVSDETEEFFPKHVPYV
Ga0268308_10032812F040723GAGMVVLCAPIPIWDRELPILDPVAXVIAFKLHVEGIRGPQALSITLQGXAPDESFLYGPSRHVEYVWAKIPQF

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