NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268308_1002146

Scaffold Ga0268308_1002146


Overview

Basic Information
Taxon OID3300028151 Open in IMG/M
Scaffold IDGa0268308_1002146 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1199
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011273Metagenome / Metatranscriptome292Y
F074342Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0268308_10021461F011273N/AMARTFALIAPVCRVLQQVLCNSETVPNAPKRKETHQNISLGSNGVDRER
Ga0268308_10021463F074342N/AVARTFALIVPVWRILQQVSCNSETVPNAPKRKETKQNMSLGSNGVDREHSLRKILERHCGINFCINCTSLALLHQVSCSSETVQKAPERKETHQNMSLGSNSVDRERSLQTILTRQRGLNFCINCTSLSCFAASFVQ
Ga0268308_10021464F011273N/AMARTFALIAPVWRVLQQVLCNSETVPNAPKRKETHQNISLGSNGVDRERSF
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