NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247682_1078596

Scaffold Ga0247682_1078596


Overview

Basic Information
Taxon OID3300028146 Open in IMG/M
Scaffold IDGa0247682_1078596 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027364Metagenome195Y
F045992Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0247682_10785961F027364GAGGMSSDKDPISARGSLRLAPASSELEVEKAKLPRQFVNFTFYKARP
Ga0247682_10785962F045992GGAMNIDTDQPDRSRRSFLQLLPLGVFAAVFASLGGAAFRFLRPRLSAPSEQWLDVANVSELSGAQPLAKKIVAEHVSGWAVTTAEHNVFVLPAQNNQVVSPICPHE

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