NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256411_1030452

Scaffold Ga0256411_1030452


Overview

Basic Information
Taxon OID3300028134 Open in IMG/M
Scaffold IDGa0256411_1030452 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_12 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001478Metagenome / Metatranscriptome687Y
F031121Metagenome / Metatranscriptome183Y
F031514Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0256411_10304521F031121N/ASELPFNRVAEMLGGTNMVLKRWRKNTRQQQFWFDEVSKTISNNYWKNYCLDIQSNGNSNNLRTTSGINSRWW
Ga0256411_10304522F031514N/AMQNRNGKTEQRWQIIYVDEYPGEPTKGQLNKKFGLYVERDFYIVSQLSSHRYLDLINNRDMAIKTPNGRKTQIWYFHQQTLTIRTRYNNQSFDIKSSGRTSKMQVWSTNSNWF
Ga0256411_10304523F001478AGGTGGMFRVKDQFYITNEKGKVVSVDGGKDGENKNLVMESRNGQVYQRWRVVYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALGTKRYLDLINNRNMVIKTQNGRKTQVWYFHQQSMTIRTSYNNQSWDIKNAGKTNDMQIWSTNSGWFQIFKYEKNQFINWENNKVLDVTSSKDEEGQAVGI
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Institute for Fundamental Biomedical Research
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